Dr Ling Zhong

Research Officer

Biography

Education

BSc(Hons), University of Sydney
PhD, University of Sydney

Role & Interests

My role and research interest involve the application of mass spectrometry for routine protein identification from biological samples and exploring techniques for phosphopeptide enrichment prior to analysis by mass spectrometry.

Publications

Conference Papers

Wang P; Yang JYH; Raftery M; Zhong L; Wilson S, 2013, 'Latin Square dataset for evaluating the accuracy of mass spectrometry-based protein identification and quantification', in 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2013), Shanghai, China, pp. 65 - 67, presented at 2013 IEEE International Conference on Bioinformatics and Biomedicine, Shanghai, China, 18 December 2013 - 21 December 2013, http://dx.doi.org/10.1109/BIBM.2013.6732765
Velonas VM; Raftery M; Zhong L; Poljak A; Assinder S; Woo H; Remedios CD, 2012, 'Peptide-based mass spectrometry identification of exosome proteins from prostate cancer cell lines', in BJU INTERNATIONAL, WILEY-BLACKWELL, Darwin, AUSTRALIA, pp. 20 - 21, presented at 65th Annual Scientific Meeting on Urological-Society-of-Australia-and-New Zealand, Darwin, AUSTRALIA, 21 April 2012 - 24 April 2012, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000303003900030&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a
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Journal articles

Hamm JN; Erdmann S; Eloe-Fadrosh EA; Angeloni A; Zhong L; Brownlee C; Williams TJ; Barton K; Carswell S; Smith MA; Brazendale S; Hancock AM; Allen MA; Raftery MJ; Cavicchioli R, 2019, 'Unexpected host dependency of Antarctic Nanohaloarchaeota', Proceedings of the National Academy of Sciences of the United States of America, vol. 116, pp. 14661 - 14670, http://dx.doi.org/10.1073/pnas.1905179116
Hu M; Lee M; Zhong L; Manefield MJ, 2019, 'Method Development for DNA and Proteome SIP Analysis of Activated Sludge for Anaerobic Dichloromethane Biodegradation.', Methods Mol Biol, vol. 2046, pp. 207 - 219, http://dx.doi.org/10.1007/978-1-4939-9721-3_16
Santiago FS; Sanchez-Guerrero E; Zhang G; Zhong L; Raftery MJ; Khachigian LM, 2019, 'Extracellular signal-regulated kinase-1 phosphorylates early growth response-1 at serine 26', Biochemical and Biophysical Research Communications, vol. 510, pp. 345 - 351, http://dx.doi.org/10.1016/j.bbrc.2019.01.019
Begg DJ; de Silva K; Di Fiore L; Taylor DL; Bower K; Zhong L; Kawaji S; Emery D; Whittington RJ, 2018, 'Corrigendum to “Experimental infection model for Johne's disease using a lyophilised, pure culture, seedstock of Mycobacterium avium subspecies paratuberculosis” [Veterinary Microbiology 141 (2010) 301-311] (Experimental infection model for Johne's disease using a lyophilised, pure culture, seedstock of Mycobacterium avium subspecies paratuberculosis (2010) 141(3–4) (301–311), (S0378113509004088), (10.1016/j.vetmic.2009.09.007))', Veterinary Microbiology, vol. 224, pp. 119, http://dx.doi.org/10.1016/j.vetmic.2018.08.023
Daniel S; Nylander V; Ingerslev LR; Zhong L; Fabre O; Clifford B; Johnston K; Cohn R; Barres R; Simar D, 2018, 'T-cell epigenetic remodeling and accelerated epigenetic aging are linked to long-term immune alterations in childhood cancer survivors', Clinical Epigenetics, vol. 10, pp. 138 - 138, http://dx.doi.org/10.1186/s13148-018-0561-5
Yau KPS; Murphy AB; Zhong L; Mai-Prochnow A, 2018, 'Cold plasma effect on the proteome of Pseudomonas aeruginosa-Role for bacterioferritin', PLoS ONE, vol. 13, http://dx.doi.org/10.1371/journal.pone.0206530
Wai Luu LD; Octavia S; Zhong L; Raftery MJ; Sintchenko V; Lan R, 2018, 'Comparison of the whole cell proteome and secretome of epidemic bordetella pertussis strains from the 2008–2012 Australian epidemic under sulfate-modulating conditions', Frontiers in Microbiology, vol. 9, http://dx.doi.org/10.3389/fmicb.2018.02851
Luu LDW; Octavia S; Zhong L; Raftery MJ; Sintchenko V; Lan R, 2018, 'Proteomic Adaptation of Australian Epidemic Bordetella pertussis', Proteomics, vol. 18, http://dx.doi.org/10.1002/pmic.201700237
Luu LDW; Octavia S; Zhong L; Raftery M; Sintchenko V; Lan R, 2017, 'Characterisation of the Bordetella pertussis secretome under different media', Journal of Proteomics, vol. 158, pp. 43 - 51, http://dx.doi.org/10.1016/j.jprot.2017.02.010
Erdmann S; Tschitschko B; Zhong L; Raftery MJ; Cavicchioli R, 2017, 'A plasmid from an Antarctic haloarchaeon uses specialized membrane vesicles to disseminate and infect plasmid-free cells', Nature Microbiology, vol. 2, pp. 1446 - 1455, http://dx.doi.org/10.1038/s41564-017-0009-2
Strbenac D; Zhong L; Raftery MJ; Wang P; Wilson SR; Armstrong NJ; Yang JYH, 2017, 'Quantitative Performance Evaluator for Proteomics (QPEP): Web-based Application for Reproducible Evaluation of Proteomics Preprocessing Methods', Journal of Proteome Research, vol. 16, pp. 2359 - 2369, http://dx.doi.org/10.1021/acs.jproteome.6b00882
Gardiner M; Bournazos AM; Maturana-Martinez C; Zhong L; Egan S, 2017, 'Exoproteome analysis of the seaweed pathogen Nautella italica R11 reveals temperature-dependent regulation of RTX-like proteins', Frontiers in Microbiology, vol. 8, http://dx.doi.org/10.3389/fmicb.2017.01203
Unnikrishnan A; Guan YF; Huang Y; Beck D; Thoms JAI; Peirs S; Knezevic K; Ma S; De Walle IV; De Jong IDE; Ali Z; Zhong L; Raftery MJ; Taghon T; Larsson J; MacKenzie KL; Van Vlierberghe P; Wong JWH; Pimanda JE, 2016, 'A quantitative proteomics approach identifies ETV6 and IKZF1 as new regulators of an ERG-driven transcriptional network', Nucleic Acids Research, vol. 44, pp. 10644 - 10661, http://dx.doi.org/10.1093/nar/gkw804
Jayasena T; Poljak A; Braidy N; Zhong L; Rowlands B; Muenchhoff J; Grant R; Smythe G; Teo C; Raftery M; Sachdev PS, 2016, 'Application of targeted mass spectrometry for the quantification of sirtuins in the central nervous system', Scientific Reports, vol. 6, pp. 35391 - 35391, http://dx.doi.org/10.1038/srep35391
Dolai S; Sia KCS; Robbins AK; Zhong L; Heatley SL; Vincent TL; Hochgräfe F; Sutton R; Kurmasheva RT; Revesz T; White DL; Houghton PJ; Smith MA; Teachey DT; Daly RJ; Raftery MJ; Lock RB, 2016, 'Quantitative phosphotyrosine profiling of patient-derived xenografts identifies therapeutic targets in pediatric leukemia', Cancer Research, vol. 76, pp. 2766 - 2777, http://dx.doi.org/10.1158/0008-5472.CAN-15-2786
Tschitschko B; Williams TJ; Allen MA; Zhong L; Raftery MJ; Cavicchioli R, 2016, 'Ecophysiological distinctions of haloarchaea from a hypersaline Antarctic lake determined using metaproteomics.', Appl Environ Microbiol, vol. 82, pp. 3165 - 3173, http://dx.doi.org/10.1128/AEM.00473-16
Gardiner M; Fernandes ND; Nowakowski D; Raftery M; Kjelleberg S; Zhong L; Thomas T; Egan S, 2015, 'VarR controls colonization and virulence in the marine macroalgal pathogen Nautella italica R11', Frontiers in Microbiology, vol. 6, http://dx.doi.org/10.3389/fmicb.2015.01130
Tschitschko B; Williams TJ; Allen MA; Páez-Espino D; Kyrpides N; Zhong L; Raftery MJ; Cavicchioli R, 2015, 'Antarctic archaea–virus interactions: metaproteome-led analysis of invasion, evasion and adaptation', The ISME Journal, vol. 9, pp. 2094 - 2107, http://dx.doi.org/10.1038/ismej.2015.110
Masoudi S; Zhong L; Raftery MJ; Stapleton FJ; Willcox MD, 2014, 'Method development for quantification of five tear proteins using selected reaction monitoring (SRM) mass spectrometry', Investigative Ophthalmology and Visual Science, vol. 55, pp. 767 - 775, http://dx.doi.org/10.1167/iovs.13-12777
Liao BM; Raddatz K; Zhong L; Parker BL; Raftery MJ; Schmitz-Peiffer C, 2014, 'Proteomic analysis of livers from fat-fed mice deficient in either PKCδ or PKCε identifies Htatip2 as a regulator of lipid metabolism', Proteomics, vol. 14, pp. 2578 - 2587, http://dx.doi.org/10.1002/pmic.201400202
Lee H; Ma R; Grimm MC; Riordan SM; Lan R; Zhong L; Raftery M; Zhang L, 2014, 'Examination of the anaerobic growth of Campylobacter concisus strains', International Journal of Microbiology, vol. 2014, http://dx.doi.org/10.1155/2014/476047
Omali NB; Zhao Z; Zhong L; Raftery MJ; Zhu H; Ozkan J; Willcox MDP, 2012, 'Quantification of protein deposits on silicone hydrogel materials using stable-isotopic labeling and multiple reaction monitoring', Biofouling, vol. 28, pp. 697 - 709, http://dx.doi.org/10.1080/08927014.2012.702763
Fan L; Liu M; Zhong L; Kjelleberg S; Thomas T, 2012, 'Metaproteogenomic analysis of a community of sponge symbionts', ISME Journal, vol. 6, pp. 1515 - 1525, http://dx.doi.org/10.1038/ismej.2012.1
Zhong L; Taylor D; Begg D; Whittington R, 2011, 'Biomarker discovery for ovine paratuberculosis (Johne's disease) by proteomic serum profiling', Comparative Immunology Microbiology and Infectious Diseases, vol. 34, pp. 315 - 326, http://dx.doi.org/10.1016/j.cimid.2011.03.001
You J; Fitzgerald A; Cozzi PJ; Zhao Z; Graham PH; Russell PJ; Walsh B; Willcox MD; Ling Z; Wasinger VC; Li Y, 2010, 'Post-translation modification of proteins in tears', Electrophoresis, vol. 31, pp. 1853 - 1861, http://dx.doi.org/10.1002/elps.200900755
Begg DJ; de Silva K; Di Fiore L; Taylor DL; Bower K; Zhong L; Kawaji S; Emery D; Whittington RJ, 2010, 'Experimental infection model for Johne's disease using a lyophilised, pure culture, seedstock of Mycobacterium avium subspecies paratuberculosis', Veterinary Microbiology, vol. 141, pp. 301 - 311, http://dx.doi.org/10.1016/j.vetmic.2009.09.007
Zhong L; Di Fiore L; Taylor D; Begg D; de Silva K; Whittington RJ, 2009, 'Identification of differentially expressed genes in ileum, intestinal lymph node and peripheral blood mononuclear cells of sheep infected with Mycobacterium avium subsp paratuberculosis using differential display polymerase chain reaction', VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY, vol. 131, pp. 177 - 189, http://dx.doi.org/10.1016/j.vetimm.2009.04.007
Ling Z; Taylor D; Whittington R, 2008, 'Proteomic profiling of ovine serum by SELDI-TOF MS: optimization, reproducibility and feasibility of biomarker discovery using routinely collected samples', Comparative Immunology Microbiology and Infectious Diseases, vol. 33, pp. 47 - 63, http://dx.doi.org/10.1016/j.cimid.2008.07.009
Taylor D; Ling Z; Begg D; De Silva K; Whittington R, 2008, 'Toll-like receptor genes are differentially expressed at the sites of infection during the progression of Johne’s disease in outbred sheep', Veterinary Immunology and Immunopathology, vol. 124, pp. 132 - 151, http://dx.doi.org/10.1016/j.vetimm.2008.02.021
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Location

Rm 404B, L4 NW, Wallace Wurth Bldg (C27)

Contact

+61 (2) 9385 2717
+61 (2) 9385 3950